PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014672
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 228aa    MW: 25522.9 Da    PI: 5.48
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014672genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-135396755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i++ A+ YI++Lq
  DCAR_014672 53 VSERNRRKKLNDRLYALRAVVPNI-----TKMDKASIVKDAISYIQELQ 96
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1845112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7044695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-1449100No hitNo description
SMARTSM003532.4E-1652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1752112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-115396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MESLDEYQLY WETNRYYNAE ELGSLLLDDT LSAYYDSSSP DGGQSSAASK NIVSERNRRK  60
KLNDRLYALR AVVPNITKMD KASIVKDAIS YIQELQEQER RIQGEIAQLE SMASKKQDLY  120
SEDSKQADQT SACKKKKRTV HEPQQLCSYD SGKSSSTSSP IEVIELRVSY IGEKTIVVSL  180
TCTKTTDTII KLCQVFETLK LKIITANITS LSDTLLKTLF IEVFGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-145196954Transcription factor MYC2
5gnj_B1e-145196954Transcription factor MYC2
5gnj_E1e-145196954Transcription factor MYC2
5gnj_F1e-145196954Transcription factor MYC2
5gnj_G1e-145196954Transcription factor MYC2
5gnj_I1e-145196954Transcription factor MYC2
5gnj_M1e-145196954Transcription factor MYC2
5gnj_N1e-145196954Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245303.11e-160PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV93e-67BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A165XA251e-164A0A165XA25_DAUCS; Uncharacterized protein
STRINGVIT_11s0052g00100.t012e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-59bHLH family protein