PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014673
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 243aa    MW: 26934.6 Da    PI: 4.9192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014673genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-145497755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +Er+RR+++N+++  Lr ++P+      +K++Ka++++ A+ YI++Lq
  DCAR_014673 54 VAERNRRQKLNDRLYALRAIVPNI-----TKMDKASTVKDAISYIQELQ 97
                 68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-1846113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.664796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-1350100No hitNo description
SMARTSM003538.8E-1753102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-1753113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-115497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MESFDEYKLH WETNSNYNAE ELIRSLLQDD TLLAPGDSIA PDGGQPSAAS RNIVAERNRR  60
QKLNDRLYAL RAIVPNITKM DKASTVKDAI SYIQELQEQE GRIQGEIAQL ESMASEKQDW  120
CKKKRIAHEQ QQLSSYVSGG GGSSSSPPIQ VIDIKVSYVE AKIIVASLIC SKRTDAIIKL  180
CEAFESLKFK IITANITSFS ATLSMTVFIE ADEMEKDTIK IEIETAIRAV NHPGLQSNEL  240
LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1452116973Transcription factor MYC2
5gnj_B1e-1452116973Transcription factor MYC2
5gnj_E1e-1452116973Transcription factor MYC2
5gnj_F1e-1452116973Transcription factor MYC2
5gnj_G1e-1452116973Transcription factor MYC2
5gnj_I1e-1452116973Transcription factor MYC2
5gnj_M1e-1452116973Transcription factor MYC2
5gnj_N1e-1452116973Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15059RNIVAERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245640.11e-115PREDICTED: transcription factor bHLH35-like
TrEMBLA0A165XA161e-178A0A165XA16_DAUCS; Uncharacterized protein
STRINGXP_008223870.12e-77(Prunus mume)
STRINGVIT_11s0052g00100.t011e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-61bHLH family protein