PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014674
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 254aa    MW: 28215.7 Da    PI: 5.4444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014674genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-135496855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  Er+RR+++N+++  Lr ++P+      +K++Ka+i++ A+ YI++Lq
  DCAR_014674 54 SERNRRKKLNDRLYALRAVVPNI-----TKMDKASIVKDAISYIQELQ 96
                 6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-1846112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2594695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1752112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-1453100No hitNo description
PfamPF000107.1E-115496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MESLDEYQLY WETNSYYHAE ELGSLLLDDT LSAYYDSSSP DGGQSSTASK TIVSERNRRK  60
KLNDRLYALR AVVPNITKMD KASIVKDAIS YIQELQEQER RIQGEIAQLE SMASKKQDLC  120
SEDSKQADQT SSCKKKKKTV HEPQQLCSHD SGGSRSSSSS SPIEVIELRV SYIGEKTIVV  180
SLTCTKTTDT IIKLCQVFET LKLKIISANI TSLSDTLLKT VFIEADEKEK NTVKSEIETA  240
VAAHNHPDSP MSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1454961254Transcription factor MYC2
5gnj_B1e-1454961254Transcription factor MYC2
5gnj_E1e-1454961254Transcription factor MYC2
5gnj_F1e-1454961254Transcription factor MYC2
5gnj_G1e-1454961254Transcription factor MYC2
5gnj_I1e-1454961254Transcription factor MYC2
5gnj_M1e-1454961254Transcription factor MYC2
5gnj_N1e-1454961254Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247569.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV93e-76BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A165XA080.0A0A165XA08_DAUCS; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-68bHLH family protein