PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014844
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Dof
Protein Properties Length: 349aa    MW: 37316.2 Da    PI: 8.9928
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014844genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.56.3e-3869128362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e+alkcprC+st+tkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+ss
  DCAR_014844  69 EAALKCPRCESTHTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSS 128
                  7789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3052117IPR003851Zinc finger, Dof-type
PfamPF027016.9E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.06872126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVFSSIPPYL DPPNWQQNPH NYFRSGNNDL LPPAPPPAPP QQHGVGGAGS IRPGSMVDQA  60
RMANIPMPEA ALKCPRCEST HTKFCYFNNY SLSQPRHFCK TCRRYWTRGG ALRSVPVGGG  120
CRRNKRSSKG SSSSASKSEP ANSGSSNTTL PSYNTNAATP PTSSMLGGLI TSQIPQLRFL  180
PPLNHLMDYA TPGRETAGFS YGGSTSGTPV VSTSEMNFQM GSNLFSGSSG GGLEQWRLHQ  240
MPQFPNFLGG FDPSMSHSGV LYQINNQDGG VEASKLSSSS SMMSQLASVK MEANNNNNNN  300
NQNHESSSAR QFTAAPVEGN EHHWSTNVGT TAWTDLSGFS PSSTSNPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244876.10.0PREDICTED: dof zinc finger protein DOF2.4-like isoform X1
TrEMBLA0A165WZK60.0A0A165WZK6_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g00180.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-42DNA binding with one finger 2.4