PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014892

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

YABBY

Protein Properties

Length: 210aa MW: 23661.8 Da PI: 8.8546

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014892	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220	6.9e-68	7	181	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkveeenlksnvekeesas 93 v ++eq+Cy+ CnfCn +lavsvP +sl+++vtvrCGhC++l svn+a a+ + ++ + +++ +++ l++++ ++ ++ + +s+s DCAR_014892 7 VSAATEQLCYIPCNFCNIVLAVSVPCSSLYEIVTVRCGHCSNLWSVNMAAAAFQALSTWQ-EHQPHQPilmytiyLTDKQAPNSGYSPEYRSDMSSSS 103 67799****************************************9998854444443.2333333455664322222222222333333444444 PP YABBY 94 tsvsseklsenedeev.prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +s++k+++ p++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl DCAR_014892 104 SARSNNKITTRPLPINpPEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 181 44555555444443330344449***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-69	10	181	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	120	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.6E-4	128	175	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSSCINVSAA TEQLCYIPCN FCNIVLAVSV PCSSLYEIVT VRCGHCSNLW SVNMAAAAFQ 60 ALSTWQEHQP HQPILMYTIY LTDKQAPNSG YSPEYRSDMS SSSSARSNNK ITTRPLPINP 120 PEQRVVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG 180 LMLESNNNQS KLDENAAKFR MPRSAYLNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245045.1	1e-132	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	5e-78	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A165WX33	1e-154	A0A165WX33_DAUCS; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	9e-91	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-76	YABBY family protein

Link Out ? help Back to Top
Phytozome	DCAR_014892

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]