PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014990

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 489aa MW: 54505.3 Da PI: 9.4719

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014990	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.9e-08	356	403	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 WT E l+d+v q+G g W+ I + + +Rt+ ++k++w+++ DCAR_014990 356 VWTIAEVRDLIDGVSQYGVGKWTEIKKLLFsssAHRTPVDLKDKWRNL 403 7*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.008	349	408	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-12	350	410	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.01E-15	351	420	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-9	353	406	IPR001005	SANT/Myb domain
CDD	cd11660	2.90E-20	355	405	No hit	No description
Pfam	PF13921	2.4E-7	357	412	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MVGLTSARQV PDEMPPEVQP GHLQETDSIF NTFVGFSDGV AHFNFDSHLE KFSSGFKNGD 60 SGTIFVSDSS TTLSPVLKCN SLEKINSESN RKLSFKHESE TLKDMNHSEL HTSYATKNAE 120 KQVDVSDHLL RGVGSDHMEK DTAFSLGITG EGVSYSSRNV QDDEGRVVGR DIGLGSFNVH 180 ESEPSCQRNN VCASQRRSRK PTLRYIDESS EPISKHSKKR RRISTAPSAM KTSGVGSNAI 240 KSRTPVLCSD ESFMEAIQVP FDSQVQVPVE SQKQVPVDSR VKVLVDSRVK VPVDSQVKVP 300 VYSHVKAPVD YKKQAQGESQ YHTPDSATET SLDKLEHDFS TPVISKKVKC SRKHKVWTIA 360 EVRDLIDGVS QYGVGKWTEI KKLLFSSSAH RTPVDLKDKW RNLIKASCAE EQRKKEMQDK 420 KGRNQPWRPL PKSILRRVRE LAMIYPCPYN GNSEDLNVCQ DSSTSYSSIK TGSSPHIRGK 480 KLHRKIAL*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MVGLTSARQV PDEMPPEVQP GHLQETDSIF NTFVGFSDGV AHFNFDSHLE KFSSGFKNGD  60
SGTIFVSDSS TTLSPVLKCN SLEKINSESN RKLSFKHESE TLKDMNHSEL HTSYATKNAE  120
KQVDVSDHLL RGVGSDHMEK DTAFSLGITG EGVSYSSRNV QDDEGRVVGR DIGLGSFNVH  180
ESEPSCQRNN VCASQRRSRK PTLRYIDESS EPISKHSKKR RRISTAPSAM KTSGVGSNAI  240
KSRTPVLCSD ESFMEAIQVP FDSQVQVPVE SQKQVPVDSR VKVLVDSRVK VPVDSQVKVP  300
VYSHVKAPVD YKKQAQGESQ YHTPDSATET SLDKLEHDFS TPVISKKVKC SRKHKVWTIA  360
EVRDLIDGVS QYGVGKWTEI KKLLFSSSAH RTPVDLKDKW RNLIKASCAE EQRKKEMQDK  420
KGRNQPWRPL PKSILRRVRE LAMIYPCPYN GNSEDLNVCQ DSSTSYSSIK TGSSPHIRGK  480
KLHRKIAL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	222	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245578.1	0.0	PREDICTED: uncharacterized protein LOC108217251
TrEMBL	A0A165WT99	0.0	A0A165WT99_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9155	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-23	TRF-like 6

Link Out ? help Back to Top
Phytozome	DCAR_014990