PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015027
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 554aa    MW: 60371.8 Da    PI: 6.7858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015027genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.53e-17169255186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L++a++e+  +l+rg+l++ +Weev+ ++  r ++  +s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  DCAR_015027 169 EWSDTAIACLLDAYTEKFMQLNRGNLRGRDWEEVAGNVseRCEKQCKSVEQCKNKVDNLKKRYKLERHRMSNG-GISASHWPWFKKME 255
                  5*************************************555556678************************99.566679*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-20167255No hitNo description
Gene3DG3DSA:3.40.1160.102.5E-71293546IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.23309547IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.88E-55310546IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.04E-116312547No hitNo description
PfamPF006961.1E-19313526IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MASCDDDFSL LDGNATNSNA QSNPNPNLHR LAATHHHQSF PHRFSKATPI HAPPPVQSLI  60
QPILQPHVES SKDLSGDDDG DAEGYSDGAF CSQPDPKAFH GAIPFSGDND QVPFENEADM  120
TRSRVNHEKR SDREELSDGG TPYSYKRSKL VNSIASAGGS GEYRKDREEW SDTAIACLLD  180
AYTEKFMQLN RGNLRGRDWE EVAGNVSERC EKQCKSVEQC KNKVDNLKKR YKLERHRMSN  240
GGISASHWPW FKKMEVIVGN ALPMKTVSEE DKSIGGSASS LKPSKRYGTA TSSPSAQIAN  300
MKTKQVTNPK WRRVVFKISG ASLAGSGSHS IDPKVAMLIA REVSMACQIG VEVAIVVGGR  360
NFFCGDTWVT ETGLDRCTAY QIGMMATVMN SILLQSALEK MGVQTRVQTA FAMPEVAEPY  420
SRQRAIRHLE KGRVVIFGGI GAGTGNPLFS TDTAAALRAS EIHADAVLKG TMTNNTDGVY  480
EFESRNNSGL FEHVTFREMA SRGSTAMDMM AVTFCEENCI PVVIFNLLEP GNISRALSGE  540
QVGTLVDQTG QIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-613115469239Uridylate kinase
3ek5_B4e-613115469239Uridylate kinase
3ek5_C4e-613115469239Uridylate kinase
3ek5_D4e-613115469239Uridylate kinase
3ek5_E4e-613115469239Uridylate kinase
3ek5_F4e-613115469239Uridylate kinase
3ek6_A4e-613115469239Uridylate kinase
3ek6_B4e-613115469239Uridylate kinase
3ek6_C4e-613115469239Uridylate kinase
3ek6_D4e-613115469239Uridylate kinase
3ek6_E4e-613115469239Uridylate kinase
3ek6_F4e-613115469239Uridylate kinase
3nwy_A4e-6131154650279Uridylate kinase
3nwy_B4e-6131154650279Uridylate kinase
3nwy_C4e-6131154650279Uridylate kinase
3nwy_D4e-6131154650279Uridylate kinase
3nwy_E4e-6131154650279Uridylate kinase
3nwy_F4e-6131154650279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248555.10.0PREDICTED: uncharacterized protein LOC108219562
TrEMBLA0A165WRW60.0A0A165WRW6_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein