PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015057
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 243aa    MW: 27511.4 Da    PI: 4.4519
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015057genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-17101143145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g+W++eEd +lv+a+k lG++ W+ I + ++ gR++ ++k+rw+
      DCAR_015057 101 KGPWSEEEDSKLVNAHKNLGNK-WAEITKLLP-GRSEISIKNRWN 143
                      79********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.50896150IPR017930Myb domain
SuperFamilySSF466892.35E-1498151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-1998148IPR009057Homeodomain-like
SMARTSM007176.0E-15100148IPR001005SANT/Myb domain
PfamPF002497.5E-15101144IPR001005SANT/Myb domain
CDDcd001671.06E-11103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNPLLQNLFE DQLLPSTSAS NGINDVELVD SSFQKLYNEF KDLIQNPNDP KLSVTLDESC  60
SLSSQNQCIR EEKAKKRGKI DERYWSKEED SVTDYMYKMQ KGPWSEEEDS KLVNAHKNLG  120
NKWAEITKLL PGRSEISIKN RWNAMKRRCL NAIKQRQKPN CSNLENYIKS LISNKDQSSA  180
ICIDSDVVSR AQGGSNGLPS SVPNDLYDDD NSSNLESLTN LIYNSDEDDS GFVELRDLLD  240
DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A1e-1398148252MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A1e-1398148252MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245561.11e-161PREDICTED: transcription factor MYB98-like
TrEMBLA0A165WQI61e-174A0A165WQI6_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-20myb domain protein 98