PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015107
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 253aa    MW: 28843.8 Da    PI: 9.6906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015107genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003394116223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C+++++++ +L  H +  H
  DCAR_015107  94 SCSVCSRVYPTSRLLSIHVSEaH 116
                  6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.66691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SMARTSM003555.493116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
SMARTSM003550.37131156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEMEVEKKEI GFKYWFPSRR RFFPDSPFFA SGNVERELLA KQLALDITED EKQELAYIED  60
REKRGVSCPI VGCRVHMNSL EDFEDHYKAR HTASCSVCSR VYPTSRLLSI HVSEAHDSFF  120
QAKVARGHAM YECLVEGCDA KLKSYKSRQQ HLVDKHKFPT SFEFFKKSLP SKKQRQKSHR  180
KQAPKVEAAS SAMQVDEETM SGLVSAVSKL STSDSSPSSI SFGRRHTRGL TFVPRSVQRD  240
KKLDSAPKET PR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177KKQRQKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245900.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A165WNA00.0A0A165WNA0_DAUCS; Uncharacterized protein
STRINGVIT_14s0068g01930.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.15e-91zinc ion binding;nucleic acid binding;zinc ion binding