PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015138
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 246aa    MW: 27809.9 Da    PI: 4.8382
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015138genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-1155155198
                  EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                  f+k+lt+sdv  + +r+++pk +  e+   +  +++     ++d     ++W++ ++   ++ s++yvl+ G++e+ +++g+kegD + ++ d++ s+
  DCAR_015138  55 FEKKLTRSDVEGRqHRIIIPKAYG-EIlfpE--TATRACFYFMDdmAAAKVWTFLIRSwtKGASKTYVLE-GTEEYIQEHGVKEGDYIKIYKDHEtSR 148
                  99********88779********9.555642..4444456666634555*******77344444448888.********************6665444 PP

                  E..EEEEE- CS
           B3  90 felvvkvfr 98 
                    + +++++
  DCAR_015138 149 --FAIGWRK 155
                  ..5998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1452160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-1154154IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001155157IPR003340B3 DNA binding domain
PfamPF023627.5E-955156IPR003340B3 DNA binding domain
CDDcd100179.19E-1555155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAGDQENATA ILSNSSGTDT SNCSGSLNKK RKARVLMPEA PVPREVNESM VELQFEKKLT  60
RSDVEGRQHR IIIPKAYGEI LFPETATRAC FYFMDDMAAA KVWTFLIRSW TKGASKTYVL  120
EGTEEYIQEH GVKEGDYIKI YKDHETSRFA IGWRKNDQDT DKSLADGLKK VDSPATSSEI  180
ASDQKNGIPA NSSRVAFAND YHPYFSPHDE TYDISINDVV DPEYVQKNFN MTWDEFQGFN  240
PFEFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-14551615111B3 domain-containing transcription factor FUS3
6j9b_D5e-14551615111B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A162A9K20.0A0A162A9K2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-17B3 family protein