PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015140
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 431aa    MW: 48164.5 Da    PI: 4.7093
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015140genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.37.7e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C +  H+       H++v
  DCAR_015140 16 ARACDSCLRKRARWYCAADDAFLCQVCDSLVHSAnqlasrHDRV 59
                 578*****************************657788888776 PP
2CCT68.22.3e-23372415144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  DCAR_015140 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 415
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7221461IPR000315B-box-type zinc finger
SMARTSM003363.6E-101461IPR000315B-box-type zinc finger
PfamPF006432.2E-71659IPR000315B-box-type zinc finger
CDDcd000216.35E-101761No hitNo description
PfamPF062035.8E-18372414IPR010402CCT domain
PROSITE profilePS5101716.083372414IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MNTERKTANA VGGKTARACD SCLRKRARWY CAADDAFLCQ VCDSLVHSAN QLASRHDRVR  60
LKTASFKQSE STSGDDLVPA WQGFTRKART PRHTKPGLNS HFKDKERIIN TSSLVPKMGS  120
EEVSEEDETE AQLLYRVPIF DPFAAELCNV STEVENLLVD DCKSEPVINH NELNAFLSSN  180
DGNEGACDLD NLPLFLPSEM ELEEFAADVE TLLGKGFDEE SCGIEALGLI ECKEENVTEN  240
NFQGSGVKVE DEEQAIIASH FDPGLDGSAE TIDWDFDYDS PMTGEEHEEV KVEVVAPSET  300
TNSDAKEGGK KMFLRLNYDE VITSWDNKGC PWTSGVRPEF NPDDCWTDFM GLYAPSTQQP  360
YGSEGGRNDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFAGG  420
SAALPYQINK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382398RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244294.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A165WMF70.0A0A165WMF7_DAUCS; Uncharacterized protein
STRINGXP_010265147.11e-155(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-94B-box type zinc finger protein with CCT domain