PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015144

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 259aa MW: 28815.1 Da PI: 7.5448

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015144	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	138	185	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + +k + a +L + ++Y++sLq DCAR_015144 138 SHSLAERVRRGKINEKIKCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 185 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-16	132	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.12E-9	132	188	No hit	No description
PROSITE profile	PS50888	14.964	134	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	134	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-6	138	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-9	140	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MELMMNQYTN AIPSAINTSN SSINNLMVFP NENFSSQIPG FQGNLEYNFR SFSHEDNKDV 60 TLESASVQRN DFCSSKKRIA GHEVEVCSSN SSPQASGSGN KRKNNSGAVK RSKSSDKDEE 120 KPDDVVHVRA RRGQATDSHS LAERVRRGKI NEKIKCLQDI VPGCHKTMGM AVMLDEIINY 180 VQSLQNQVDF LSMKLSAAST FHDINSQTDA FEQLQRAMAY EAQKMQRVVR RGNEEVASTQ 240 FGPLDLNFGS YPTLPYNS*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017248404.1	0.0	PREDICTED: transcription factor BEE 3-like isoform X1
Swissprot	Q8GWK7	5e-55	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A165WMA0	0.0	A0A165WMA0_DAUCS; Uncharacterized protein
STRING	XP_009620411.1	2e-83	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	3e-53	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	DCAR_015144

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]