PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015369

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 181aa MW: 21197.7 Da PI: 7.1946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015369	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	52	92	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P Kl+ +++Le+A+ Y+k L DCAR_015369 52 ARERRHRISERFKILQSLVPGG-----SKLDTVSMLEEAIVYVKFL 92 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.275	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-14	48	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.72E-12	49	96	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-11	49	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-13	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-7	52	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MECYNINSSF KYCDNNNEMQ HLEKKKKMKS GKKQACGRKE VKLSTDPQSV AARERRHRIS 60 ERFKILQSLV PGGSKLDTVS MLEEAIVYVK FLKNQLWWLI HYHTQQHQNI NFNYNSNDYH 120 VVLDEQPSTS FNDLPYDDRD PRRISTRDDS GLFLQNASSY DHEMAQILEF QDSWLAETSV 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023919897.1	3e-33	transcription factor LAX PANICLE 1
TrEMBL	A0A165ABZ6	1e-133	A0A165ABZ6_DAUCS; Uncharacterized protein
STRING	XP_010092808.1	4e-30	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-27	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	DCAR_015369