PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015505
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 259aa    MW: 29239.3 Da    PI: 6.9396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015505genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004115137123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C++sF++   L  H  +H
  DCAR_015505 115 YECKTCNRSFPSFQALGGHRASH 137
                  99**********99999998887 PP
2zf-C2H213.90.00016180202123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  DCAR_015505 180 HECSICGSEFSSGQALGGHMRRH 202
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-13114139IPR007087Zinc finger, C2H2
SuperFamilySSF576678.52E-9114137No hitNo description
SMARTSM003550.06115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576678.52E-9175202No hitNo description
Gene3DG3DSA:3.30.160.609.6E-4178202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-12179203IPR007087Zinc finger, C2H2
SMARTSM003550.02180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764180202IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
METSSQDFIM EEAQRQIIRG KRTKRPRPCT TTSTSSSGGD RYQENDGYSS VLTPQSCENS  60
ASTEEDEDMA NCLILLAQSG SSFNLKQDHN DENYTKKFHS QKFSENSRKT ESEAYECKTC  120
NRSFPSFQAL GGHRASHKKP KNNLDEKKAL ITTILHDKED QELNFKKMSP SNSPQKAKVH  180
ECSICGSEFS SGQALGGHMR RHRIPTTNPN STMMNHEDQK PRNHLLQLDL NLPAPEDDHF  240
DSKFQFVFTA PALVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KRPRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248456.10.0PREDICTED: zinc finger protein ZAT5
SwissprotQ681X43e-54ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A165A9600.0A0A165A960_DAUCS; Uncharacterized protein
STRINGGorai.006G104800.11e-63(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-55C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]