PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015602
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 242aa    MW: 27809.1 Da    PI: 6.9268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015602genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+ +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
      DCAR_015602  9 KGPWTEQEDVQLALCVNLYGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding51.42.5e-1662107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++y+
      DCAR_015602  62 RGKMSSHEERLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 107
                      899*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.742156IPR017930Myb domain
SuperFamilySSF466892.32E-287103IPR009057Homeodomain-like
SMARTSM007175.8E-15858IPR001005SANT/Myb domain
PfamPF002492.0E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-191063IPR009057Homeodomain-like
CDDcd001673.20E-101156No hitNo description
PROSITE profilePS5129424.60957111IPR017930Myb domain
SMARTSM007176.5E-1561109IPR001005SANT/Myb domain
PfamPF002495.8E-1462106IPR001005SANT/Myb domain
CDDcd001676.49E-1064107No hitNo description
Gene3DG3DSA:1.10.10.606.9E-2264110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MELEGEMRKG PWTEQEDVQL ALCVNLYGDR RWDFIAKVSG LKRTGKSCRL RWVNYLHPGL  60
KRGKMSSHEE RLVLELHSRW GNRWSRIARK LPGRTDNEIK NYWRTYMRKK SQEKKRTKLS  120
SPSSSVSYNS SYSSSSTISS TKIKDTDERN FFDTGGVAAT GLSDAAEIQK GEYSMDEIWN  180
DIVSSDDDEI KPVCPTLVPP IWDYCQDSLW NTDQGKDTDM FLHTSEPFYS LFGPEETFFA  240
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2861101104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-28311052158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-28311052158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244256.10.0PREDICTED: transcription factor MYB48
SwissprotQ9LX821e-76MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A165A7F51e-180A0A165A7F5_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g04140.t012e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-77myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]