PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015768
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 400aa    MW: 45318.9 Da    PI: 5.3214
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015768genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.52.6e-22158209254
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                  ++l+Wt+eLH+rFvea+  + G ++A+P +il +m+v+gLt+ h++SHLQkY 
  DCAR_015768 158 EKLVWTCELHSRFVEAILII-GYHRAVPANILGVMNVEGLTRGHIASHLQKYQ 209
                  699*****************.9******************************6 PP
2Response_reg88.12.5e-2941101109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   vl+vdD+++ + +l+ +lek +y ev+ ++d++eal +l++k +Dl+++D+ mp+mdGl+l ++i++   +lp+i+++a +  e +   ++ Ga++f
   DCAR_015768   4 VLVVDDDRTCLYILKACLEKWNY-EVTIVKDAHEALSMLQNKSFDLVITDVHMPKMDGLKLQERINQDF-NLPVILISADSRAEVMCMGINNGAQRF 98 
                   89*********************.*****************************************9999.9************************** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   ++Kp+ +++l +
   DCAR_015768  99 FVKPIVEDDLKD 110
                   *****9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-331125IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.1E-351136No hitNo description
SMARTSM004484.3E-282112IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.4513116IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-254110IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.87E-305113No hitNo description
PROSITE profilePS512949.187154213IPR017930Myb domain
SuperFamilySSF466899.68E-14155214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-21155214IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-18158209IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MYNVLVVDDD RTCLYILKAC LEKWNYEVTI VKDAHEALSM LQNKSFDLVI TDVHMPKMDG  60
LKLQERINQD FNLPVILISA DSRAEVMCMG INNGAQRFFV KPIVEDDLKD IWQFIEWGKR  120
NRNNNTIRGT QINESSEESR TVIDSHKDND NTTGKRREKL VWTCELHSRF VEAILIIGYH  180
RAVPANILGV MNVEGLTRGH IASHLQKYQK FLERVLAGEK NIEFSNWTDL NYYSSFVKGN  240
PNLVLLNLLR DEQMKGNLAA QNPLRLQKEG TSARAPNGSS SSFHPLPQLT LVRSSSRTIY  300
ETFRQKNYCS ENVASCGLRS ATSPILGNKH RDPGMDISLC ANQFGNTSTM NAHELGGENL  360
TDESWFNNIG REDDNDYSLN IENDEDVDAN KDLNPEGDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-15157213157Transcription factor LUX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245394.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A162A8490.0A0A162A849_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-47response regulator 2