PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015846

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 187aa MW: 21144.9 Da PI: 9.7835

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015846	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.5	7.8e-19	82	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIr p + k +r++lg++ t+e+Aa a+++a+ kl+g DCAR_015846 82 RYRGVRRRP-WGKFAAEIRNPAK--KGTRIWLGTYNTPEDAALAYDKAAFKLRG 132 8******.******844..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.22E-32	81	140	No hit	No description
SuperFamily	SSF54171	6.54E-23	82	140	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.289	82	140	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-13	82	132	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-31	82	140	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-34	82	148	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	83	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	106	122	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MNFISIPDSD LAVLDSIRQH LLEDVYDFNS FTESSSCNFF INEMPCCNVD KITDTVKFPK 60 QERVKMQEVE RPHGSYSQDW KRYRGVRRRP WGKFAAEIRN PAKKGTRIWL GTYNTPEDAA 120 LAYDKAAFKL RGSRAKVNFP GMIGSYISEP IRDTIKGQPT SSASSSSSAI SDNSESSKRR 180 KVLNLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	8e-29	81	140	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	9e-29	81	145	4	68	ATERF1
3gcc_A	9e-29	81	145	4	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246657.1	1e-138	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q40479	7e-35	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A162A6B1	1e-136	A0A162A6B1_DAUCS; Uncharacterized protein
STRING	XP_009593489.1	9e-44	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-35	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	DCAR_015846

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]