PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015853
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 177aa    MW: 19837.1 Da    PI: 6.0223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015853genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-1872122255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y GVr+++ +g+++AeIr p +  k  r++lg++ t+e+Aa a+++a+ kl+g
  DCAR_015853  72 RYIGVRRRP-WGKFAAEIRNPAK--KGSRIWLGTYETPEDAALAYDKAAFKLRG 122
                  799******.**********844..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-2971131No hitNo description
PfamPF008476.8E-1372122IPR001471AP2/ERF domain
SMARTSM003805.0E-3372136IPR001471AP2/ERF domain
PROSITE profilePS5103223.49972130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-3172131IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2272131IPR016177DNA-binding domain
PRINTSPR003674.0E-127384IPR001471AP2/ERF domain
PRINTSPR003674.0E-12112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MYSSSMSESD VALLDSIRRH LLEDIDDFDC FAHHTSSCNV PNYGWDDLFI DENVEPIQGV  60
GPECHSAHDW KRYIGVRRRP WGKFAAEIRN PAKKGSRIWL GTYETPEDAA LAYDKAAFKL  120
RGSRAKVNFP DMLGTCISEL IGDSAKRQSP EPADSLSSSS STLSEDFESS KRRRKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2871130463ATERF1
3gcc_A2e-2871130463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245362.11e-129PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A165A2361e-128A0A165A236_DAUCS; Uncharacterized protein
STRINGXP_009593488.15e-43(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-35ethylene-responsive element binding factor 13