PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015869
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 374aa    MW: 41367 Da    PI: 7.0845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015869genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15210256455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRd+iN+++ +L++++P++      K +Ka++L ++++Y+k+Lq
  DCAR_015869 210 VHNQSERKRRDKINQRMITLQKMVPNS-----SKIDKASMLDEVIDYMKQLQ 256
                  6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-16203259No hitNo description
PROSITE profilePS5088817.085206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-18209278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17210264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-13210256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-16212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSQCVPGWDV DDNTKLTSQS HSLYLSPDLS SLDYEVAELT WENGHLSMHG LGQPRLPYDI  60
WDKPCLGGTL ESIVDQATFF PDNKSVGDGA DAWTTGGVID ALVPCTDNNN MVEGSSTRVM  120
DSGLGRQVES CRDVTMAFEE VRVERPPSPQ QNATSAKQCT ANDHQSVCQT NPQVGVTKFA  180
KPTEAVHEEG KKKTNDKSSV SAKRRRAAAV HNQSERKRRD KINQRMITLQ KMVPNSSKID  240
KASMLDEVID YMKQLQAQVI MMSRMNGSPM TLPHAMQQQL QMSMMGMGHF IDMNPAMACH  300
PNLMAVSPSV LHPVPSVLHP VAHRLNPPAQ SMHDSMSTFL AACQSQPMTM DAYSRMATFY  360
HHMNQNHGPR VMK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203218RRRAAAVHNQSERKRR
2214219ERKRRD
3215220RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245006.10.0PREDICTED: transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-66UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A165A1S00.0A0A165A1S0_DAUCS; Uncharacterized protein
STRINGcassava4.1_027046m8e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]