PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015900
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GeBP
Protein Properties Length: 257aa    MW: 28753.6 Da    PI: 7.2157
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015900genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.68.9e-2959154298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lf+r+++eeDei+l  G+i+fk kt+++ps+ + af +fvk+s+s +v+ +q+v Ki +LK+Kf  +v k ++g++p   k+hd k fels+ iWgs
  DCAR_015900  59 LFSRVFTEEDEIALVEGMIEFK-KTNSNPSSKMVAFQSFVKDSLSCDVNVKQIVGKISKLKQKFVCNVGKLQNGEDPMSWKPHDYKLFELSREIWGS 154
                  799******************5.5666********************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-2460153IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAKPQNLPSP ESESTDDSES ESQQPTKNPC DNVLSACKKP IKPNAKRPAD KASTSKGELF  60
SRVFTEEDEI ALVEGMIEFK KTNSNPSSKM VAFQSFVKDS LSCDVNVKQI VGKISKLKQK  120
FVCNVGKLQN GEDPMSWKPH DYKLFELSRE IWGSEVLGGM EKDKNDDHGG SKTEAEGELW  180
WSLYPCLCAS LEAEANKKFR GTISAKEYVN KVVRGLETKR AVELEGEWKN FVVMQQQVYA  240
ERTKMIRKQA EAVMNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244331.10.0PREDICTED: mediator-associated protein 1-like
RefseqXP_017244332.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A165A1320.0A0A165A132_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01260.12e-17DNA-binding storekeeper protein-related transcriptional regulator