PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015927

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 178aa MW: 20116.1 Da PI: 7.5017

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015927	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	186.2	2.3e-57	5	176	197	374
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 + gEal +n+v +l+r++ + sl ++L ++++ sP++v+++eqe++hn++ Fl rfl+al+yysa+fdsl+a++p +s +r+kvE+ + ei DCAR_015927 5 RVGEALTINSVNRLQRVP--RNSL----GSLLAMIRDQSPNIVTIAEQETSHNGPYFLGRFLKALHYYSAIFDSLDATFPLDSAHRVKVEQYISTLEI 96 459************9..4444....45**************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +n+vace er++rhe+lekWr+ +e+ GF+ vpls +a++q + ll ++ dgy++ e++g+l+lgW+drp++++ aWr DCAR_015927 97 QNIVACEVPERVMRHEKLEKWRKIMESKGFEGVPLSANAVTQSNILLGLYSCDGYSLTEDHGCLLLGWQDRPILAAYAWR 176 *****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.162	1	156	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.7E-55	5	176	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MFNRRVGEAL TINSVNRLQR VPRNSLGSLL AMIRDQSPNI VTIAEQETSH NGPYFLGRFL 60 KALHYYSAIF DSLDATFPLD SAHRVKVEQY ISTLEIQNIV ACEVPERVMR HEKLEKWRKI 120 MESKGFEGVP LSANAVTQSN ILLGLYSCDG YSLTEDHGCL LLGWQDRPIL AAYAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-39	2	175	206	377	Protein SCARECROW
5b3h_D	6e-39	2	175	206	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245655.1	1e-108	PREDICTED: DELLA protein RGL1-like
Swissprot	G7L166	1e-100	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A165A0D3	1e-130	A0A165A0D3_DAUCS; Uncharacterized protein
STRING	XP_006470106.1	1e-100	(Citrus sinensis)
STRING	XP_006447014.1	1e-100	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12566	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	8e-45	RGA-like 2

Link Out ? help Back to Top
Phytozome	DCAR_015927

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]