PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015947
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 197aa    MW: 21994.3 Da    PI: 4.4103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015947genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.66e-10851443798
                  EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ +  g+s  v++  + +++ + l++ W +F+++n L +gD++vF+l+++s++ l   +f+
  DCAR_015947  85 QVLQVAGKSRPVNC--NMNGNLFRLSSMWDRFAQDNLLFVGDVCVFELINNSTKLLQAEIFS 144
                  456678999*****..999999***************************9877767766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1069139IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-885144IPR003340B3 DNA binding domain
CDDcd100176.05E-785137No hitNo description
SuperFamilySSF1019361.2E-987137IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MIGDFSCAAD SLGPWDVNYK GLLADEPMCC VFRPGAKANI VISLDIKTET EEGNAGGCWA  60
LFAKAFCFVV NQFEETYKKW KDSDQVLQVA GKSRPVNCNM NGNLFRLSSM WDRFAQDNLL  120
FVGDVCVFEL INNSTKLLQA EIFSAAKEAN GFGAKVCKEI YYQNTVAMLP FEYRMEESGW  180
LSAMFTTPVF ILYDLL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164ZZY81e-143A0A164ZZY8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893