PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015989

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GeBP

Protein Properties

Length: 430aa MW: 47546.9 Da PI: 9.2112

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015989	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	72.7	7.1e-23	25	108	4	95
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 ++wseeD+++lL+G+id++ ++ +sp+dd+ +f +fvk +++++v+++ql++K+ +L+kKf + + + +sk+h k fel+k i DCAR_015989 25 VSVWSEEDDVSLLKGMIDYEVQNQASPYDDLGKFLDFVKPCLHLDVQRKQLTDKLWKLRKKFVNSSYD--------LSKAHHAKLFELAKLI 108 689************************************************************99888........9999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.5E-18	27	108	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MFESRSRGKA RSSNEQGSKK KNACVSVWSE EDDVSLLKGM IDYEVQNQAS PYDDLGKFLD 60 FVKPCLHLDV QRKQLTDKLW KLRKKFVNSS YDLSKAHHAK LFELAKLIKS WGHGENVSVD 120 CGKGENVVSG DDGNGRKDKN SKVGRNKQRG ELVADGGLNG EKGNVGVDGD AGVNMGTEVV 180 MKKKKFVNED GQIVKENEGV SGVVKSGKKS KVGRKKQNEE LVADDGQIGE KDDAGMDDDG 240 HVNMGMEVVK QKRKFANEDG QIVKDNEGIS GVVKSGKKSK VDRKKQKEEL VANDGQIGEK 300 DNVGMDDDVH VNTGMKVFKQ KRKFVNGDGQ EIDGISGVVK GRKSSKDLEE LTCMYPQLIK 360 GLKLETLSRM PQNLKDNCVV DTINFMGKEK ANELEEKWTD LRVMELGLQA KKLDLAKTHI 420 NLIFEAARR*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MFESRSRGKA RSSNEQGSKK KNACVSVWSE EDDVSLLKGM IDYEVQNQAS PYDDLGKFLD  60
FVKPCLHLDV QRKQLTDKLW KLRKKFVNSS YDLSKAHHAK LFELAKLIKS WGHGENVSVD  120
CGKGENVVSG DDGNGRKDKN SKVGRNKQRG ELVADGGLNG EKGNVGVDGD AGVNMGTEVV  180
MKKKKFVNED GQIVKENEGV SGVVKSGKKS KVGRKKQNEE LVADDGQIGE KDDAGMDDDG  240
HVNMGMEVVK QKRKFANEDG QIVKDNEGIS GVVKSGKKSK VDRKKQKEEL VANDGQIGEK  300
DNVGMDDDVH VNTGMKVFKQ KRKFVNGDGQ EIDGISGVVK GRKSSKDLEE LTCMYPQLIK  360
GLKLETLSRM PQNLKDNCVV DTINFMGKEK ANELEEKWTD LRVMELGLQA KKLDLAKTHI  420
NLIFEAARR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245307.1	0.0	PREDICTED: uncharacterized protein LOC108216957
TrEMBL	A0A164ZZ26	0.0	A0A164ZZ26_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-17	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	DCAR_015989