PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016046

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 473aa MW: 52745.9 Da PI: 7.7657

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016046	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.8e-21	133	188	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k DCAR_016046 133 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 188 688999***********************************************999 PP
2	START	89	1e-28	332	468	1	117
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++ ++elvk+a+ +ep+W + e++n+de+l++f +ea+r+sg+v+ ++ lve+l+d++ +W e+++ + +t+ DCAR_016046 332 ELALASMDELVKMAQTDEPLWIRNWeggrEMLNYDEYLRIFNN--PcngprpngLVTEASRESGMVIINSLALVETLMDSN-KWAEMFPcmiaRTSTT 426 57899*****************99***********44..45699***************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirq 117 +vis+g galqlm elq+lsplvp R++ f+R+++q DCAR_016046 427 DVISNGmggtrnGALQLMHVELQVLSPLVPvREVHFLRFCKQ 468 ***************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.97E-21	117	190	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-22	119	190	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	130	190	IPR001356	Homeobox domain
SMART	SM00389	9.0E-19	131	194	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-18	133	188	IPR001356	Homeobox domain
CDD	cd00086	5.17E-18	133	190	No hit	No description
PROSITE pattern	PS00027	0	165	188	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	21.614	323	472	IPR002913	START domain
SuperFamily	SSF55961	1.23E-13	323	468	No hit	No description
Pfam	PF01852	1.1E-22	332	468	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MSFAGFLDNS TSSGGRIAGE NNSLGYSNNM PSGAISQPRL VTQSFVKSMI NSPGLSLALF 60 LLTVRVLSCF VKNSRRVWRG KVTRMGENNY ETNTNVGGRR SRDEEHESRS GSDNMDGGSG 120 DDQDADDMKP PRKKRYHRHT PQQIQELESL FKECPHPDEK QRLELSRRLS LETRQVKFWF 180 QNRRTQMKTQ LERHENSLLR QENDKLRAEN MSIREAMRNP ICTNCGGPAM IGDISLEEQH 240 LRMENARLKD ELDKVCALTG KFLGRPMSSL ASPTSLELGV GGNGFGGLSS VSTAMPLGPP 300 DYGNGISSSL SVIPQNRSNS GPTGMERSMY LELALASMDE LVKMAQTDEP LWIRNWEGGR 360 EMLNYDEYLR IFNNPCNGPR PNGLVTEASR ESGMVIINSL ALVETLMDSN KWAEMFPCMI 420 ARTSTTDVIS NGMGGTRNGA LQLMHVELQV LSPLVPVREV HFLRFCKQLI FI*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MSFAGFLDNS TSSGGRIAGE NNSLGYSNNM PSGAISQPRL VTQSFVKSMI NSPGLSLALF  60
LLTVRVLSCF VKNSRRVWRG KVTRMGENNY ETNTNVGGRR SRDEEHESRS GSDNMDGGSG  120
DDQDADDMKP PRKKRYHRHT PQQIQELESL FKECPHPDEK QRLELSRRLS LETRQVKFWF  180
QNRRTQMKTQ LERHENSLLR QENDKLRAEN MSIREAMRNP ICTNCGGPAM IGDISLEEQH  240
LRMENARLKD ELDKVCALTG KFLGRPMSSL ASPTSLELGV GGNGFGGLSS VSTAMPLGPP  300
DYGNGISSSL SVIPQNRSNS GPTGMERSMY LELALASMDE LVKMAQTDEP LWIRNWEGGR  360
EMLNYDEYLR IFNNPCNGPR PNGLVTEASR ESGMVIINSL ALVETLMDSN KWAEMFPCMI  420
ARTSTTDVIS NGMGGTRNGA LQLMHVELQV LSPLVPVREV HFLRFCKQLI FI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236322.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A162A5T7	0.0	A0A162A5T7_DAUCS; Uncharacterized protein
STRING	EOX96069	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-151	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_016046

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]