PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016172

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 218aa MW: 23574.8 Da PI: 7.3383

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016172	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGgg+rk k+s DCAR_016172 16 EQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRS 76 57899***************************************************88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	6	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.369	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MQDPSTYSQI NLQFPEQEHL KCPRCDSSNT KFCYYNNYNL SQPRHLCKNC KRYWTKGGTL 60 RNIPVGGGSR KVTKRSSNPK KSTNSKSTQE KQEPLSASAS VINTKDQDGS LLEIGGTFSS 120 LLEVNNGQFG NMIEGLNASG SPSLQLGDFS QNQSNSGLGS SLVANPFVEF GNNKDSEGFL 180 GVQHDQDSSS WSGTSGDPDL AMYTPGSSFS VDKSFNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249745.1	1e-159	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	O82155	2e-38	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A164XAQ9	1e-157	A0A164XAQ9_DAUCS; Uncharacterized protein
STRING	XP_010267036.1	2e-77	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-37	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	DCAR_016172

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]