PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016199
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 203aa    MW: 21938.4 Da    PI: 4.6805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016199genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-184089255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a++ ++g
  DCAR_016199 40 NYIGVRKRS-WGKWVSEIREPRK---KSRIWLGTYNTAEMAARAHDVAALTIKG 89
                 699***888.**********843...6**********************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-133989IPR001471AP2/ERF domain
CDDcd000181.75E-313997No hitNo description
SuperFamilySSF541715.36E-214098IPR016177DNA-binding domain
PROSITE profilePS5103222.6554097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-314098IPR001471AP2/ERF domain
SMARTSM003801.9E-3440103IPR001471AP2/ERF domain
PRINTSPR003671.5E-94152IPR001471AP2/ERF domain
PRINTSPR003671.5E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MATEPHTSAF SCPSGSGSGS SLSSDKKRKR QKDCGTQHPN YIGVRKRSWG KWVSEIREPR  60
KKSRIWLGTY NTAEMAARAH DVAALTIKGD SAILNFPQLA ELLPRAESGS PRDVQAAAAK  120
AAAMDSSELS PALSGNESSV NASTNSDELG EIIELPSLEG CFDSGSSMDE LVLVDSDDLW  180
LYTPWWVLEN ELDVQYSQQG MI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-203298673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251373.11e-148PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391275e-53TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD37e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A164XBF61e-146A0A164XBF6_DAUCS; Uncharacterized protein
STRINGXP_006426907.15e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]