PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016284
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 244aa    MW: 26873.1 Da    PI: 9.9562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016284genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-2086134355
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +grW AeIrd       r r++lg+f+++eeAa+a++ a+++l+g
  DCAR_016284  86 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDSPEEAARAYDSAARRLRG 134
                  9*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.2E-3285148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-2985142IPR001471AP2/ERF domain
PfamPF008474.5E-1485134IPR001471AP2/ERF domain
PROSITE profilePS5103222.39285142IPR001471AP2/ERF domain
PRINTSPR003671.0E-98697IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2186142IPR016177DNA-binding domain
CDDcd000182.16E-2986143No hitNo description
PRINTSPR003671.0E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNTHLQIHRY LLDYHHHQTQ QPYSWPTPGP PDENPSPVLE GIGAIVGEHV LFGRSAAVKS  60
PDNKNTAKED HSGGEAAHAP PQERSYRGVR KRPWGRWSAE IRDRIGRCRH WLGTFDSPEE  120
AARAYDSAAR RLRGSKAKTN FEIPSVFPIS PGTEGSSSSS LSSEVKKRKA GGAKTGAHKR  180
KCAVVTSMAQ LFSNTTACVT QVEPRNTKFQ EKIKNMNFDE GVDLELDLKL GTTSFSFNGG  240
FLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-16861531581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251324.10.0PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M53e-27ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A161YIG70.0A0A161YIG7_DAUCS; Uncharacterized protein
STRINGXP_004305488.13e-54(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-27ERF family protein