PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016461

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 198aa MW: 21441.3 Da PI: 6.9688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016461	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8e-40	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+rkC +dC++ap+fp e+ ++f vhk+FGasnv+kll+++ +++reda+s+l+yeA+ar++dPvyG+v+ i+ lq q+e l++el++++ DCAR_016461 14 PCAACKFLKRKCLPDCIFAPHFPPEELQNFISVHKIFGASNVSKLLNEVLPHQREDAASTLAYEANARLKDPVYGCVRAISILQLQVEGLQKELDEAN 111 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e DCAR_016461 112 AE 113 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.992	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-39	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAASFNVVRY NSSPCAACKF LKRKCLPDCI FAPHFPPEEL QNFISVHKIF GASNVSKLLN 60 EVLPHQREDA ASTLAYEANA RLKDPVYGCV RAISILQLQV EGLQKELDEA NAELVNYARG 120 YNHCYHPDIS GTTAAQPAPS AVPVNPMCCY AQIPPQTRPV DLINTGEAGV CNYYRIPSSV 180 TFPRNDTNQG GAAGQGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-54	12	120	9	117	LOB family transfactor Ramosa2.1
5ly0_B	8e-54	12	120	9	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ148397	1e-84	FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250577.1	1e-145	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q9FML4	3e-53	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A164XIB4	1e-144	A0A164XIB4_DAUCS; Uncharacterized protein
STRING	POPTR_0015s09370.1	2e-57	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-55	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_016461

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]