PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016463

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 200aa MW: 21716.7 Da PI: 6.3383

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016463	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.7	1.5e-41	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+rkC +dC++apyfp e+ +kf vhk+FGasnv+kll+++ +++re+++ssl yeAear+rdPvyG+vg+i+ lq q+e+l++el++++ DCAR_016463 13 PCAACKFLKRKCLPDCIFAPYFPPEEVQKFISVHKIFGASNVSKLLNEVLPHQREETVSSLSYEAEARLRDPVYGCVGTISILQLQVERLQKELDEAN 110 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e DCAR_016463 111 AE 112 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.889	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-40	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAASFKVIKY NSPCAACKFL KRKCLPDCIF APYFPPEEVQ KFISVHKIFG ASNVSKLLNE 60 VLPHQREETV SSLSYEAEAR LRDPVYGCVG TISILQLQVE RLQKELDEAN AELVSYARGH 120 HPDICGSGTP GGLPATGAVP AHPMCNYAQI PRQIIRPVDL INTGEAGACN YYQTPSSFSF 180 PWNIETDVQD QGGGTGQGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-57	12	138	10	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-57	12	138	10	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ148397	3e-97	FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251633.1	1e-148	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q9FML4	4e-59	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A164XIF2	1e-147	A0A164XIF2_DAUCS; Uncharacterized protein
STRING	EOY20851	9e-66	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-61	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_016463

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]