PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016468

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 207aa MW: 22458.5 Da PI: 4.5725

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016468	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.2e-42	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+rkC +dC++apyfpae+ +kf vhk+FGasnv kll+++ +++reda+s+l yeAear+rdPvyG+vg i+ lq q+e+l++el++++ DCAR_016468 14 PCAACKFLKRKCLPDCIFAPYFPAEELQKFISVHKIFGASNVAKLLNEVLPHQREDAASTLSYEAEARLRDPVYGCVGAISILQLQVERLQKELDEAN 111 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e DCAR_016468 112 AE 113 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.182	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAASFSVPRY DYTPCAACKF LKRKCLPDCI FAPYFPAEEL QKFISVHKIF GASNVAKLLN 60 EVLPHQREDA ASTLSYEAEA RLRDPVYGCV GAISILQLQV ERLQKELDEA NAELVSYHCC 120 YHPNMSGTIA TLPAPSAVPI NPVCDYAQIP PQIRPVDLIN TGEAEVCSYY QTPSSVTFPP 180 NDDTNVPDQG GAAGQGLLFN DSASLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-56	14	137	11	131	LOB family transfactor Ramosa2.1
5ly0_B	4e-56	14	137	11	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ148397	1e-121	FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251651.1	1e-151	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_017251652.1	1e-151	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q9FML4	6e-56	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A164XIH7	1e-150	A0A164XIH7_DAUCS; Uncharacterized protein
STRING	XP_006476856.1	2e-62	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-58	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_016468

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]