PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016536
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 859aa    MW: 94293 Da    PI: 6.3348
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016536genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.7e-29231290159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+++d ++++ tYeg+H h+
  DCAR_016536 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCSQDMSILISTYEGTHSHP 290
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-30216292IPR003657WRKY domain
SuperFamilySSF1182905.1E-26223292IPR003657WRKY domain
PROSITE profilePS5081127.91226292IPR003657WRKY domain
SMARTSM007743.5E-34231291IPR003657WRKY domain
PfamPF031062.2E-25232290IPR003657WRKY domain
Gene3DG3DSA:1.25.40.102.5E-8467497IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.919570600IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.5E-8573659IPR011990Tetratricopeptide-like helical domain
PfamPF015350.26575595IPR002885Pentatricopeptide repeat
SuperFamilySSF484523.79E-5598732IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.025601635IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-9603630IPR002885Pentatricopeptide repeat
PfamPF015351.8E-8603631IPR002885Pentatricopeptide repeat
PfamPF130414.5E-10632676IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.5E-8634667IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.21636666IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.5E-8701758IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.021702732IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.3E-5707735IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.455733767IPR002885Pentatricopeptide repeat
PfamPF130413.9E-9733780IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-4738768IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.064768802IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
METTLRRSGD GEEGDHIEAK RSLQQSNDTD EENSKNEVML LKDDDQLESV KAEMCKVRQE  60
NERLKACLDS MTVDYQTLKT KFQNIAHEQV LDQAPKNKFT DPENEPEFVF LSLGRSSPGQ  120
AKGDDPYKEK NTSPKKMETT ASPVINLQDK EEGSVKLGLN CKFDQEPACL KPDRSMEYNS  180
PREVVVKETW SPETSLKTMR SSGDDDEVSV PQNPAKKARV SVRVRCEAPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA PSCPVRKQVQ RCSQDMSILI STYEGTHSHP LPLSATAMAS  300
TTSAAAVMLL SGSSSSTSEP GPSPSATAFA AQQLHGFNFY LSKPNSSFYS LNSSNISSPS  360
CPPITLDLAN NPSPSLFNRL SPANYTPKYH NSSTSNLNFS TTTFESNTAP ISWSYGNSSH  420
QSPYNQAMSS FNFGSRQPQE KMYHSVMQNK NGTNVAPTQQ NFQPHSIEAA TKAITSDPSF  480
QSALAVAITS IMNTNNNASP KVKLEQPSTL DKNSGFGMQY ANSQQSNLML SSTPLPMSSS  540
RSNSSTSPGD NVNIGKQVHC LVIRCGLDSA VCVQTALIDF YAKMGDIDSA KQVFNGVVVK  600
DSVCYNCLIS GYSKAGDVEK ARLIFDEMEH KTVVSWNSML SCYAHNGDYS EVFRIFERMQ  660
IERCRANEYT VVMLLSVRAK LGDLDMGCRV KNFIDENKLC TNIRVSTALL EMFAKCGDVD  720
EARRVFNQMV GRDVVAWSAM NAGYAQNGRS SEALELFELM KGQQVKPNDA TIVSVLSACA  780
QLGSVEAGES IGSFVESRCL DLDLRVWTFI ELGIGNAQTS LIDWTGIDCL NQKPSHPFGN  840
AFKQLVKGML AGEAVILP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D6e-4158279516335PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251706.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A164XKH00.0A0A164XKH0_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g05810.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-59WRKY DNA-binding protein 72