PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016937
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family FAR1
Protein Properties Length: 193aa    MW: 22759.2 Da    PI: 7.3736
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016937genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.35.9e-09103172177
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 
                  +fY eY++ +G  vrks+ k++   g +t++   Cs  g+ e ++ k    rr++++ +++C+ak+ +k+  +g ++
  DCAR_016937 103 EFYTEYGRLCGLVVRKSSAKYK--GGVMTHKYVECSSAGRFEGKTIK----RRRTNTRKCECEAKIILKNCPTG-YY 172
                  6****************99888..8989999999*****99987766....8889999**********998544.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-6103172IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEGVHEETRM YTYVSLFRFC CCTPILIYFD NLRVYLTLYL LKITDHNLLL SIPWETNELN  60
EDIYVDSYKY TSPDGEEYWI PKCDKKSKPY VNQMFPDVEA VFEFYTEYGR LCGLVVRKSS  120
AKYKGGVMTH KYVECSSAGR FEGKTIKRRR TNTRKCECEA KIILKNCPTG YYIGTFLHDN  180
YIFIHQDFEV LH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228609.16e-32PREDICTED: protein FAR1-RELATED SEQUENCE 11-like, partial
TrEMBLA0A161ZZ661e-141A0A161ZZ66_DAUCS; Uncharacterized protein