PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016960

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WOX

Protein Properties

Length: 236aa MW: 26648.6 Da PI: 8.0978

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016960	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.7e-15	31	89	2	55
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 r R+++t++q+++Le F++ + +p ++ + + k+l +++ ++++WFqNrR ++ DCAR_016960 31 RVRWKPTPQQITILEHIFNSgTVNPPKDVTTNIRKQLeqfgPVEDVNIFYWFQNRRSRW 89 67***************99************99999**************9 PP
2	Wus_type_Homeobox	90	2.2e-29	30	92	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r RW Ptp+Qi+iLe++++sG+++P+k+ +++i+++Le++G +ed N+fyWFQNr++R ++ DCAR_016960 30 VRVRWKPTPQQITILEHIFNSGTVNPPKDVTTNIRKQLEQFGPVEDVNIFYWFQNRRSRWSRR 92 578********************************************************6655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-13	25	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-9	25	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.754	27	92	IPR001356	Homeobox domain
SMART	SM00389	3.2E-4	29	96	IPR001356	Homeobox domain
Pfam	PF00046	6.9E-13	31	89	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MQESHQSPNR QPNDRTAASG SGSKTTNETV RVRWKPTPQQ ITILEHIFNS GTVNPPKDVT 60 TNIRKQLEQF GPVEDVNIFY WFQNRRSRWS RRMRQMRSED SAAPVDSVCS GVNNHMNLSH 120 PGFTFEPSTQ PCFFSDYNAN IDFYNPSGPY TNHNYQQNSG ASMFPDNYQQ NVNPAGGCIR 180 VFINGKATKL ATRPLDMRGM FGQDLILVHP TGLPVDEFGF DLQHGESYFL VPKPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251957.1	1e-178	PREDICTED: WUSCHEL-related homeobox 6-like
TrEMBL	A0A164XXZ2	1e-176	A0A164XXZ2_DAUCS; Uncharacterized protein
STRING	Al_scaffold_0006_1694	2e-46	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	3e-43	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	DCAR_016960