PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017032
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 580aa    MW: 64945.6 Da    PI: 9.1051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017032genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12510555655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  DCAR_017032 510 SIAERVRRTRISERMRKLQELVPHM----DKQTNTADMLDLAVDYIKDLQ 555
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932504554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15507569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-11508557No hitNo description
Gene3DG3DSA:4.10.280.102.2E-14509569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13510560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9510555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MYDDSRALFS DSSAIISSNF SPKGEQHNLF PRSRMNFDMN NIVQDSYHNN SSNENSYGDS  60
LNSSLSHYPR HSSSLTSQAG HLDNSSLYRG SFMGMDDQVK TSAGLMRQNT SPPGYISHLA  120
NKSGYGGMRD VGNYRLGNGN NRDLTSSRLK SQISLSSGIP SSLGMLPQIS ETDGGNTEPT  180
SNVDTKNRCV RDTQYHNSGY PLRSWNDSLN FADSYTLKRE LDVDDRLFSS IQVVFRRHVT  240
YLNFSNPKGE QHNLFPRSRM NFDMNNIVQD SYHNNSSNEN SYGDSLNSSL SHYPRHSSSL  300
TSQAGHLDNS SLYRGSFMGM DDQVKTSAGL MRQNTSPPGY ISHLANKSGY GGMRDVGNYR  360
LGNGNNRDLT SSRLKSQISL SSGIPSSLGM LPQISETDGG NTEPTSNVDT KNRCVRDTQY  420
HNSGYPLRSW NDSLNFADSY TLKRELDVDD RLFSSIQNGE IQNRPSLFSH HLSLPKTLSD  480
ISCMNKLLQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPHMDKQTNT  540
ADMLDLAVDY IKDLQKQYKT LNDNRANCRC SAMQKQGLK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250202.10.0PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR33e-77BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A164XZX30.0A0A164XZX3_DAUCS; Uncharacterized protein
STRINGcassava4.1_010104m8e-96(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]