PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017227
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24135.2 Da    PI: 5.0564
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017227genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.2e-2052104456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++t+eq++ Le  F ++++++ e++ ++A++lgL+ rqV vWFqNrRa++k
  DCAR_017227  52 KRKLTDEQVNMLELNFVNEHKLDSERKDRIASELGLDPRQVAVWFQNRRARWK 104
                  4589************************************************9 PP
2HD-ZIP_I/II117.67.2e-3851142293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+l++eqv++LE +F +e+kL++erK ++a+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++d+ + e+++L++ev +L+++l+e
  DCAR_017227  51 RKRKLTDEQVNMLELNFVNEHKLDSERKDRIASELGLDPRQVAVWFQNRRARWKSKKLEDEYTKLKNEHDNTVVEKCQLQNEVFKLKNQLSE 142
                  8***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.29346106IPR001356Homeobox domain
SMARTSM003894.3E-1949110IPR001356Homeobox domain
CDDcd000865.60E-1651107No hitNo description
SuperFamilySSF466891.41E-1751113IPR009057Homeodomain-like
PfamPF000463.7E-1752104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-2053112IPR009057Homeodomain-like
PRINTSPR000313.2E-57786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000313.2E-586102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSSLNDEM AILSQYYPDI YTQMTAEKGG EAKAQRRRKK SKGEGSCSMF RKRKLTDEQV  60
NMLELNFVNE HKLDSERKDR IASELGLDPR QVAVWFQNRR ARWKSKKLED EYTKLKNEHD  120
NTVVEKCQLQ NEVFKLKNQL SEAEKEMQQL AERLDGVSSN SPSSSFSMEV MDPPYLGEFG  180
MEGLENVLCM PDNYYGSNGL GIWADIYDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13553RRRKKSKGEGSCSMFRKRK
23753RKKSKGEGSCSMFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251314.11e-156PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU709e-70ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A161ZZT01e-154A0A161ZZT0_DAUCS; Uncharacterized protein
STRINGXP_009590483.14e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-68homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]