PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017269
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 280aa    MW: 31742.1 Da    PI: 6.7351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017269genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48e-112172744298
                  TS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  42 sgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    + W+++++  r++s+r+ l++GW eF ++ gL +gD++v+++ +  + ++vv+v++
  DCAR_017269 217 AKNAWKLQVKKrRGNSNRTALKDGWLEFRDDMGLSVGDVLVLEYAKYCSHHFVVHVIK 274
                  5689*****777999999**************************98888889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-8216275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-9218274IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-8219274IPR003340B3 DNA binding domain
CDDcd100171.65E-8219274No hitNo description
PROSITE profilePS508639.657221276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGHRLQPHFS LKFRNGYELL VVLNAEHSTV CGLSTLYDDF ELRGGEMLVF EFDGVSGFIV  60
HVIGNDNSEI EYPNLVHHMQ RKQPRVVSLR NDGLKFVNFV KEENPICDEL VPPVSFKRAC  120
GLILGYQNFG FSNEKQIQGG YANKIYVFDD NFVEVLFAGT PLSPGLNLHN PSVGGRIEIT  180
VQPFHMYQYA YGVDIPSEYG GVTIFWCQKD YVYIYTAKNA WKLQVKKRRG NSNRTALKDG  240
WLEFRDDMGL SVGDVLVLEY AKYCSHHFVV HVIKNGGDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258748.11e-104PREDICTED: uncharacterized protein LOC108227884 isoform X1
RefseqXP_017258749.11e-105PREDICTED: uncharacterized protein LOC108227884 isoform X2
TrEMBLA0A164Y5R80.0A0A164Y5R8_DAUCS; Uncharacterized protein