PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017328

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 261aa MW: 28399.1 Da PI: 7.5503

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017328	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	188.1	3.4e-58	119	256	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 sg ++C+dCGnqakkdC+h+RCRtCC srgf+C+thvkstWv+a+krr+rqqq+ +++++ + +++++ +kr+r+++ +++ + DCAR_017328 119 SGVINCEDCGNQAKKDCTHRRCRTCCTSRGFECQTHVKSTWVSASKRRQRQQQQLQQQQEPQLQQHSDVPKRPRQTH---------------PNPSAS 201 6889***********************************************999999999999999999999852...............223345 PP DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+ev+s+avf cvrvss+dd ge+++aYqtavsigGhvfkGiLydqG+e+ DCAR_017328 202 GFGNFPPEVRSPAVFNCVRVSSIDDvGEDQFAYQTAVSIGGHVFKGILYDQGPEN 256 6788*****************9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.3E-60	121	255	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.1E-25	123	165	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.5E-26	206	254	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MSDFFSLGGG GSSERSRGGA SRTTTSNINQ EEQERSRLNQ SAETWNLYGR SGHGPHHDQH 60 YLYSIPPDRI PFELWNQHPN PVLLQPGGAG AGAGGVMAGG EERSGDFLMM SSSSSAGGSG 120 VINCEDCGNQ AKKDCTHRRC RTCCTSRGFE CQTHVKSTWV SASKRRQRQQ QQLQQQQEPQ 180 LQQHSDVPKR PRQTHPNPSA SGFGNFPPEV RSPAVFNCVR VSSIDDVGED QFAYQTAVSI 240 GGHVFKGILY DQGPENTAPH *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250140.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	1e-55	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A164Y7B7	0.0	A0A164Y7B7_DAUCS; Uncharacterized protein
STRING	XP_006393825.1	9e-63	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-36	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	DCAR_017328

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]