PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017331
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 301aa    MW: 32660.4 Da    PI: 5.0685
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017331genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.96e-18225259135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
  DCAR_017331 225 CSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 259
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-821297IPR016679Transcription factor, GATA, plant
SuperFamilySSF577167.13E-14217281No hitNo description
PROSITE profilePS5011411.279219255IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-16219273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-14223257IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.58E-14224281No hitNo description
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
PfamPF003209.7E-16225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MECVQKALKN SSAETTAAPT LSDDFWANGQ TVDDFFVDNL LDFSEAPLFD EEQQNNEQDE  60
TLLLENEPVG EPEVKVEPSP GSVAAGSDLC FPTDDVADLE WLSHFVDDTA AGYSLTVPPA  120
PISSKPVVKC SEPEITPKPT TIFTTVHTKA RSKRTRTGVR VWSLGANSLT DSSSSSTSSS  180
SLTTSMASPS NPWAFYNDLA QSAESVFGKP PAKKKQATEA QPRRCSHCLV QKTPQWRTGP  240
LGPKTLCNAC GVRFKSGRLL PEYRPACSPT FSSEIHSNNH RKVMEMRRKK DGDDGFAVPV  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249850.10.0PREDICTED: GATA transcription factor 6-like
TrEMBLA0A161XR580.0A0A161XR58_DAUCS; GATA transcription factor
STRINGXP_009761911.11e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-51GATA transcription factor 5