PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017484
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1185aa    MW: 135982 Da    PI: 7.4261
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017484genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-104845631498
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     vl ++ +++ g+   +s++ +  + +  sW+vkl++++++   ++ + W +F+ka +L+egD++ F+l++ + +++++ +++
  DCAR_017484 484 YTKVLKRSACKTLGIR--QSMEFVDLSFKDFSWTVKLKWENGK--AYMDRKWYDFAKAGNLNEGDICAFHLTR-EPGKYRICIYE 563
                  4457888888777766..7777777777789******765555..67999********************987.78878888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-74103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-95103IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.07312101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-9246344IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.028249346IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-8260342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.924290346IPR003340B3 DNA binding domain
CDDcd100176.19E-6290344No hitNo description
SuperFamilySSF1019361.14E-9468562IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-9473553IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0029474565IPR003340B3 DNA binding domain
PfamPF023626.9E-8485563IPR003340B3 DNA binding domain
CDDcd100171.91E-6489562No hitNo description
PROSITE profilePS5086310.264513565IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-7581673IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-5881966IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0310831180IPR003340B3 DNA binding domain
PROSITE profilePS508639.03710841182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-610921178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-810981179IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1185 aa     Download sequence    Send to blast
MKMASSNRFP QFIKYICCDE SSSDEIRVPQ KFTNEHSKRL SENWILSLRN GYKIPVRYDS  60
TKSTLVGVRD LLVDFGVMGG EVLVFEQVDK GNFKLYIIGV DGCEMKYPVI MHASQQTAAV  120
EVQSANGELT FLKFVSFEKP KFDKIDVPLS FAIEFATRMP SSVKYVLNNA AQIEGSYDEF  180
KRTLGCLRKV RKVLGLRTFT AFDCLLFKYD GRRNFKLSFF DGRNVEILLD TVVMRSGNLC  240
FSLRCPSHFS VQVMPCHMMH YSHGVDVSTD FFRTSVFWKK DTITAYNGVE SWKLEVRKRK  300
FGKRATINRG WIEFMDDLGL NVGDKCWFKW IDESYHCFRV EVVRAVPILP KDFCLEVSAN  360
VPEKILLHVP PGLVWSAIYS KEMNCIQGLH NFMIYYSVKP YYLIALEYMG GLDFNMQIYN  420
PYGVEINYIV RSPCKSCYAD EFFFNFSDIE VDRLGGIMSC NVYSTGLVVY DLVITKKHLT  480
NKEYTKVLKR SACKTLGIRQ SMEFVDLSFK DFSWTVKLKW ENGKAYMDRK WYDFAKAGNL  540
NEGDICAFHL TREPGKYRIC IYETVLLSRC NEKGFGHRTG VHNWYKVVDD IFLSGGQMEI  600
PRVYTEITCG GMKKIVKLIM ADGKSVFGRF FAGKNLIYGL ENLVNSYSIE LNDILVFTYA  660
SDSTFSVSCF KYSGIEYHHN SEELDALIEE AQETIMLSDS SDASDNNVVL DHAPQEVEEM  720
VMEVSDEEQH NNSFLVTLKK SHVDKKVHGV RFSLKFAAWV VEINNNVVAK EVQQIIIASL  780
GLILHLQSEV KSLSRGFKDY AVMAFHDNEV PRIFKVALKD TCLSGVMALL EYYGCSTGAF  840
LLMEYNGGGR FMCDIFPAYE GCERWTDECD LLGKYIMKIV VYQGDDFDEL FLSDRVLEKF  900
EKALPNIVRL RIKNGKEYVA KYRRNENKLT GFKQLQDEIE IKFGDVVILS CCGDAMYTVS  960
VFGPDGMEKI PRSADIVKGD VVYKFEICVK PSHLQQYSQG VEPPISFKRA CPMLRGFQEF  1020
VFSNGKKIVG CYNHGTGRFH GFRQFASILG IKNFAKFNLV LINYEEKWEN TVSFFDDNFV  1080
EVFFSGTPLS TGYNLHNPID IPAEYVQLTT FWRKTEYINV YSGDTVWKLQ VKSRRKNSRR  1140
NTINDGWIKF RDDLGLAEGD VVVLECADYS SRYFAVRVIK NITP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164YAZ90.0A0A164YAZ9_DAUCS; Uncharacterized protein