PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017506
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25316.3 Da    PI: 9.8296
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017506genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.5e-26958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 k+ien +nrqvt+skRr+g++KKA ELSvLCda v+vi++s+t k + y 
  DCAR_017506  9 KKIENATNRQVTYSKRRKGLFKKARELSVLCDASVSVIMISTTKKAHVYT 58
                 68*****************************************9988775 PP
2K-box84.32.6e-2870167198
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yqk +g++l+++ +e+++++l kLk+ + nL re+R+ +Ge+L+ L++ eL +Le+++e+ +  iR+kK++++++q+e+ +kk ++ ++e+k L +++
  DCAR_017506  70 YQKLQGVDLWSSCYEKMKEHLIKLKEVNLNLNREIRRKMGECLDGLNFDELCNLENKMENTVMAIREKKMKMITSQTENIRKKIRNSENEQKFLLHQF 167
                  899*******************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.245161IPR002100Transcription factor, MADS-box
CDDcd002653.25E-34279No hitNo description
PRINTSPR004047.2E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31393IPR002100Transcription factor, MADS-box
PfamPF003198.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-243859IPR002100Transcription factor, MADS-box
PfamPF014865.1E-1883167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.51283173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MARGKIQIKK IENATNRQVT YSKRRKGLFK KARELSVLCD ASVSVIMIST TKKAHVYTNP  60
ISTKEFYDMY QKLQGVDLWS SCYEKMKEHL IKLKEVNLNL NREIRRKMGE CLDGLNFDEL  120
CNLENKMENT VMAIREKKMK MITSQTENIR KKIRNSENEQ KFLLHQFTYI QELRGEDPGY  180
AKVELGEEHK SYLGLSHALQ GILALNFSPN QPDPHSGV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249831.11e-163PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
RefseqXP_017249832.11e-163PREDICTED: floral homeotic protein DEFICIENS-like isoform X2
SwissprotE0CPH46e-73AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A164YBL01e-161A0A164YBL0_DAUCS; Uncharacterized protein
STRINGEOY149068e-73(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-67MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]