PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017715

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

S1Fa-like

Protein Properties

Length: 68aa MW: 7265.7 Da PI: 10.6628

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017715	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	129.5	9.3e-41	3	67	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +ea+G+nPGlivllvvggl+ flvgny+lyvyaqknlPPrkkkPvskkklk+eklkqGva+PGe DCAR_017715 3 TEAQGFNPGLIVLLVVGGLVSAFLVGNYALYVYAQKNLPPRKKKPVSKKKLKKEKLKQGVAPPGE 67 79**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.3E-37	3	67	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MDTEAQGFNP GLIVLLVVGG LVSAFLVGNY ALYVYAQKNL PPRKKKPVSK KKLKKEKLKQ 60 GVAPPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249602.1	5e-40	PREDICTED: DNA-binding protein S1FA-like
Refseq	XP_017249604.1	5e-40	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q42337	3e-14	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A162A0Z7	1e-38	A0A162A0Z7_DAUCS; Uncharacterized protein
STRING	XP_010104121.1	8e-26	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49

Link Out ? help Back to Top
Phytozome	DCAR_017715