PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017811
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 240aa    MW: 26871.3 Da    PI: 8.1048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017811genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-205199153
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                 ++y+GVr+++ +g+Wv+eIr+p        kr++lg+f+t+eeAaka+++a+  +
  DCAR_017811 51 KKYRGVRQRH-WGSWVSEIRHP-----ImkKRVWLGTFDTPEEAAKAYDHAATLM 99
                 59*******9.**********7.....447*********************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-3251111No hitNo description
Gene3DG3DSA:3.30.730.104.7E-3252109IPR001471AP2/ERF domain
SMARTSM003807.2E-3852115IPR001471AP2/ERF domain
PfamPF008473.9E-135299IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2152110IPR016177DNA-binding domain
PROSITE profilePS5103221.87852109IPR001471AP2/ERF domain
PRINTSPR003671.3E-105364IPR001471AP2/ERF domain
PRINTSPR003671.3E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPVPSALRNA NFVGQLVVEF VTDHLYNVSS PTHTLLTPVE LYDPGFMVPS KKYRGVRQRH  60
WGSWVSEIRH PIMKKRVWLG TFDTPEEAAK AYDHAATLMS GRTAKTNFPV AVPGQDSNEA  120
NDNSYGNGAI PTTPDRGYED SGSATKSNRA ETIIKEKLKK WSERRVAPSL ICLMLDTKNS  180
HIGVWQKRAG AICSHSDWIS KFDLHNNPDF TKCQNSSIKR ETGDEEDRIA LQMIEELLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1651112163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228200.10.0PREDICTED: ethylene-responsive transcription factor WIN1-like
RefseqXP_017251588.10.0PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-51WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A164YIQ41e-180A0A164YIQ4_DAUCS; Uncharacterized protein
STRINGXP_004508497.16e-57(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-54ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]