PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017831
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 218aa    MW: 24092.8 Da    PI: 8.6452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017831genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-11110135126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++t++C+ +   G+C++Gd+C+FaHg
  DCAR_017831 110 WRTKICSKWEIDGQCPFGDKCHFAHG 135
                  79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.23E-9109140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422109137IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7109136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-14110141IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9110135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNNNDHPSSK PLASKPPPYP SQNHGGSGPQ GHKDSKQMDS QTRCNFLHES PSRFRSDVAR  60
APPRESTAIN IGKVGPVMEQ NSNTNTGQAA TVKHFNANTD AFQVNMTKPW RTKICSKWEI  120
DGQCPFGDKC HFAHGHSELQ VPGAHSEAEI MTNAQYFSTK PQPQLLSDAL ATKAEAILPT  180
QERVNNEVSP KWKLHKKITT IYGDWPEDLT PPESSRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250890.11e-126PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A164YJ301e-162A0A164YJ30_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-25C3H family protein