PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017858
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 431aa    MW: 48731.1 Da    PI: 5.4266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017858genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10379428147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r+ W+  E++ l  +v+++G g+Wk+I ++       Rt+ ++k++w++ 
      DCAR_017858 379 RKVWSNLEEDTLRAGVQKYGIGNWKLILNMYKdifDERTEVDLKDKWRNM 428
                      789********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.067373430IPR017930Myb domain
SuperFamilySSF466897.18E-15376429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-12376428IPR009057Homeodomain-like
SMARTSM007176.0E-5378430IPR001005SANT/Myb domain
PfamPF002496.8E-9379428IPR001005SANT/Myb domain
CDDcd116601.31E-16380429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDTDVSRWLL DFLVRQPISD SNLTSLLSSL PLSDTDSNLK KLLLLRKLDS QISTPTQHLL  60
LLLEQIEELD HRENVTTVES MKRAYCAVAV HCTFETECFE QAVKSIWSVR VGGMVRFGNV  120
GLLCDELIRW KGDFETALSD SDVKKGLEEK WKAGVAVGDV LRGFVREAKE MMPPAFLELV  180
AQAAVQDDGA LRQLLGMEDT RQDIQMETVH RRSKVRAAKQ YKRSTPRTSS GVKIVDNDDL  240
AESDASPHKD YGCLSTPEVA ELQENLRSST LELQEMVKDP LPEAIAEAKN VASKLDCVDR  300
RSDVIPAENS NLENKGSTHQ TNATKASLME QNKTAVTYEW DELSDGSADR ESRPHFSSHK  360
KEPVTLEKHE NPKPIRRKRK VWSNLEEDTL RAGVQKYGIG NWKLILNMYK DIFDERTEVD  420
LKDKWRNMTS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248829.10.0PREDICTED: uncharacterized protein LOC108219813
TrEMBLA0A164YJP60.0A0A164YJP6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-18MYB_related family protein