PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017873

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 362aa MW: 38092 Da PI: 8.5637

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017873	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	3.8e-38	73	132	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdst+tkfCy+nnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss DCAR_017873 73 ETALKCPRCDSTHTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 132 7789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-35	56	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-32	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.236	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVFSSIPAYL DPPNWQQNQS YRSGNTEFLQ LQQQPPPVPQ PAPPQPHGVG GAGTIRPGSM 60 ADRARMANIP MPETALKCPR CDSTHTKFCY FNNYSLSQPR HFCKACRRYW TRGGALRSVP 120 VGGGCRRNKR SSKGSTSSSK SEPASSEPAN SGSTNSALPS NSTPSGGILG GLTSQIPQLG 180 YMPPLTHLNP GTHESGLNYT GISGAPNVSG EMNFQSSNLY SGSGDGGVSS LLSSSGGGLE 240 LWRMHHAPQF PNFLGGFDPS VSQGMLYQSN YQGVEGLGSA GYDGAKLSSS ASMMSQLASV 300 KMEASHNYIS TANNQDHGEP NLARQFTGSV QGNEHQWTST AGATAWTDLS GFSSSSTSNP 360 L*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVFSSIPAYL DPPNWQQNQS YRSGNTEFLQ LQQQPPPVPQ PAPPQPHGVG GAGTIRPGSM  60
ADRARMANIP MPETALKCPR CDSTHTKFCY FNNYSLSQPR HFCKACRRYW TRGGALRSVP  120
VGGGCRRNKR SSKGSTSSSK SEPASSEPAN SGSTNSALPS NSTPSGGILG GLTSQIPQLG  180
YMPPLTHLNP GTHESGLNYT GISGAPNVSG EMNFQSSNLY SGSGDGGVSS LLSSSGGGLE  240
LWRMHHAPQF PNFLGGFDPS VSQGMLYQSN YQGVEGLGSA GYDGAKLSSS ASMMSQLASV  300
KMEASHNYIS TANNQDHGEP NLARQFTGSV QGNEHQWTST AGATAWTDLS GFSSSSTSNP  360
L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250123.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A162A3F0	0.0	A0A162A3F0_DAUCS; Uncharacterized protein
STRING	EOY07547	5e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	5e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_017873