PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017942
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 195aa    MW: 21771.6 Da    PI: 11.5813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017942genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.4e-051491782155
                  HHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
          HLH  21 eeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                  + L++l+P       +K ++ ++iL++A +YI sLq
  DCAR_017942 149 QVLKSLVPG------GKsMDDVSILKEALDYILSLQ 178
                  445555554......455*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.35128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-5144186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-7147190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRGPARQVKV EFLKRWARGL QIYRNRKKNM SLIETKNAIK LSADVAMAST KLHTSQWSRA  60
LISSASSSND TNNTVVHHIL GTDKADHVKH YSENLKKSSS RICTVNSKNM VRSKKVLRKS  120
CALVRARKAG VPHRVLAATI ARRIVKRTQV LKSLVPGGKS MDDVSILKEA LDYILSLQVQ  180
VNIMRRVVEM SELA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250391.11e-139PREDICTED: uncharacterized protein LOC108221000
RefseqXP_017250392.11e-139PREDICTED: uncharacterized protein LOC108221000
TrEMBLA0A162A3J21e-138A0A162A3J2_DAUCS; Uncharacterized protein
STRINGVIT_11s0037g01230.t016e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-07APRATAXIN-like