PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017993
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 293aa    MW: 32517.7 Da    PI: 9.9731
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017993genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.92.6e-25202260259
                  --SS-EEEEEEE--TT-SS-EEEEEE.-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrC.tsagCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+W+KY qK v g+ fpr+YY+C t++gCp++k+ver+++dp+v++ tYegeH+h+
  DCAR_017993 202 ADEYSWKKYDQKLVPGTVFPRGYYKCnTFKGCPARKRVERTSNDPTVLILTYEGEHRHH 260
                  69************************5566****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.465196262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-25197260IPR003657WRKY domain
SuperFamilySSF1182903.92E-21200261IPR003657WRKY domain
SMARTSM007742.4E-24201261IPR003657WRKY domain
PfamPF031061.3E-21203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAIDLINYAK IEDFTAAHES RGSINIIEDE IMRILQSHNQ RNQQVQVDEV KEETKAVRRT  60
GHARFRRGPA ESEPVKPAEV KSNVKSVEME TEMNVKSVKE CKDVNSANSS GSSSITGEEG  120
TVSNGKAVLG AGAAPAPRTY SSGKPPLPTS LRKRSREMEM EKMLISKSSG SRGCHCCKRR  180
KTVVKKEIKR VTSGSAGDCI PADEYSWKKY DQKLVPGTVF PRGYYKCNTF KGCPARKRVE  240
RTSNDPTVLI LTYEGEHRHH HNHHRSQSSS HHHPRVAALT RLNNSTDVGL CH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-152032591974Probable WRKY transcription factor 4
2lex_A9e-152032591974Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177189KRRKTVVKKEIKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249823.10.0PREDICTED: probable WRKY transcription factor 11
TrEMBLA0A164YN350.0A0A164YN35_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-42WRKY DNA-binding protein 11