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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | DCAR_018020 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 248aa MW: 27950.7 Da PI: 5.0611 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 35.6 | 1.7e-11 | 54 | 97 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
Er+RR+++ ++++ Lr ++P+ + Kl+ a+i + A+ YI++Lq
DCAR_018020 54 VSERNRRKKLTDRLHALRAVVPNiS------KLDRASIIKDAISYIQELQ 97
57*********************66......******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.697 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.27E-15 | 51 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.59E-11 | 51 | 100 | No hit | No description |
| SMART | SM00353 | 3.1E-13 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.7E-15 | 54 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.5E-9 | 55 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 248 aa Download sequence Send to blast |
MESLEDFTLY WETHRYLQTE ELDSLVLDET FSAYYDSSSP DGAQQSRVAP KNIVSERNRR 60 KKLTDRLHAL RAVVPNISKL DRASIIKDAI SYIQELQEQE TRIQGEISQL ESMASNKTGN 120 SFDDTMIPLT MSKKKRTDQQ QLFCDYSGGS RSLPSPVQVT ELRVSYVGRK TVVVTITCSK 180 ERDTIVRLCE AFESLKLKVI TANITSISGT LWKTVLVEAQ EEEIDILKAK IENAIAALNF 240 PDSPISY* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017248784.1 | 0.0 | PREDICTED: transcription factor bHLH35-like | ||||
| Swissprot | Q2HIV9 | 1e-72 | BH035_ARATH; Transcription factor bHLH35 | ||||
| TrEMBL | A0A164YNM2 | 0.0 | A0A164YNM2_DAUCS; Uncharacterized protein | ||||
| STRING | VIT_11s0052g00100.t01 | 1e-100 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2923 | 24 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57150.1 | 3e-76 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | DCAR_018020 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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