PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018023
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 253aa    MW: 28220.8 Da    PI: 5.0855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018023genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-135396755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+ YI++Lq
  DCAR_018023 53 VSERNRRKKLNDRLYALRAVVPNI-----TKMDKASIIKDAISYIQELQ 96
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1964695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.56E-145099No hitNo description
SuperFamilySSF474591.18E-1750111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-1652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-1753111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-105496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESLEEYKLY WETNHYLQTQ ELDSLVLDET LSAYYDSSSP DGPHSSGAPK NIVSERNRRK  60
KLNDRLYALR AVVPNITKMD KASIIKDAIS YIQELQEQET RIQSEITQLE SMACNRSNSF  120
DEFNQAGADT TTSVVSKKKK KKRSARQQEL FSNDCGGSRS SPSPVQVIEL RVSCVGEKTV  180
AVSITCSKER DTIVKLCEAF ESLNLKVITA NITSFSGTLL KTLLIEADEE EIDTLKTKIE  240
SAIAAFNFPT VQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1649111669Transcription factor MYC2
5gnj_B7e-1649111669Transcription factor MYC2
5gnj_E7e-1649111669Transcription factor MYC2
5gnj_F7e-1649111669Transcription factor MYC2
5gnj_G7e-1649111669Transcription factor MYC2
5gnj_I7e-1649111669Transcription factor MYC2
5gnj_M7e-1649111669Transcription factor MYC2
5gnj_N7e-1649111669Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142KKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249870.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV93e-77BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A164YNM90.0A0A164YNM9_DAUCS; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-69bHLH family protein