PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018026
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 219aa    MW: 24018.9 Da    PI: 10.0904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018026genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-131962755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+ YI++Lq
  DCAR_018026 19 VSERNRRKKLNDRLYALRAVVPNI-----TKMDKASIIKDAISYIQELQ 62
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0051261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-181578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-131666No hitNo description
SMARTSM003536.8E-161867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-171978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-102062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLKNSTDGPH SSVAPKNIVS ERNRRKKLND RLYALRAVVP NITKMDKASI IKDAISYIQE  60
LQEQEKILGD EITQLESMAS KKNKSLCELD QAAAEMTMLS TVSKKKRTDK QQLLSNNSGG  120
SSLLPSPVQV IELRVSHVGG KTAVVSITCR KQRDTIVKLC ETFESLKLKV ITANITAFSE  180
TLLKTVFVEA EKKEINGLKT TIESAIAALK FPDSSISL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-151762954Transcription factor MYC2
5gnj_B4e-151762954Transcription factor MYC2
5gnj_E4e-151762954Transcription factor MYC2
5gnj_F4e-151762954Transcription factor MYC2
5gnj_G4e-151762954Transcription factor MYC2
5gnj_I4e-151762954Transcription factor MYC2
5gnj_M4e-151762954Transcription factor MYC2
5gnj_N4e-151762954Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250303.11e-103PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV94e-58BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A164YNQ41e-155A0A164YNQ4_DAUCS; Uncharacterized protein
STRINGVIT_11s0052g00100.t013e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-58bHLH family protein